In Physiome.jp, the following tools contributing to the development of physiome and systems biology are released.

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PhysioDesigner is a tool to build mathematical computable models of hierarchical physiological systems. Models developed on PhysioDesigner are written in PHML format.
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A simulator for models written in PHML and SBML formats. This can parse also PHML-SBML hybrid models. Flint is a standalone application. There is also cloud-based Flint, called Flint K3.
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MedMod tool is aimed at constructing models form medical and cellular images based on Matlab,
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A visualiser of simulation data with voxel-based morphological data. This can create a cut-off animation if there are many data files of an object along time.
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This is a medical image viewer supporting MAT, VTK, ANALYZE, NifTI, RAW, VOL, STL, OBJ, VRML formats. This can also convert formats among them.
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A graph plotter of time series data supporting CSV and ISD formats. ISD is a binary format defined in Flint project.
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A converter between ISD and CSV formats. ISD is a binary data format describing data, including a time series data. ISD format was defined in Flint project.
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A standalone client application of the Dynamic Brain Platform (DBPF), a neuroinformatics platform promoted by the INCF Japan Node, which has an online database.
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A standalone client application of the PH Database at Physiome.jp.
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PhysioDesigner is a tool to build mathematical computable models of hierarchical physiological systems. Models developed on PhysioDesigner are written in PHML format.
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A simulator for models written in PHML and SBML formats. This can parse also PHML-SBML hybrid models. Flint is a standalone application. There is also cloud-based Flint, called Flint K3.
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This is a medical image viewer supporting MAT, VTK, ANALYZE, NifTI, RAW, VOL, STL, OBJ, VRML formats. This can also convert formats among them.
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MedMod tool is aimed at constructing models form medical and cellular images based on Matlab,
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A visualiser of simulation data with voxel-based morphological data. This can create a cut-off animation if there are many data files of an object along time.
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A graph plotter of time series data supporting CSV and ISD formats. ISD is a binary format defined in Flint project.
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A converter between ISD and CSV formats. ISD is a binary data format describing data, including a time series data. ISD format was defined in Flint project.
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This is a standalone client application of the Dynamic Brain Platform (DBPF), a neuroinformatics platform promoted by the INCF Japan Node, which has an online database.
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This is a standalone client application of the PH Database at Physiome.jp.